We gratefully acknowledge support from
the Simons Foundation and member institutions.

Quantitative Biology

Authors and titles for recent submissions

[ total of 52 entries: 1-25 | 26-50 | 51-52 ]
[ showing 25 entries per page: fewer | more | all ]

Thu, 22 Aug 2019

[1]  arXiv:1908.08024 [pdf, other]
Title: Mapping of Local and Global Synapses on Spiking Neuromorphic Hardware
Comments: 17 pages, 7 figures, published in 2018 Design, Automation & Test in Europe Conference & Exhibition (DATE)
Subjects: Neurons and Cognition (q-bio.NC); Emerging Technologies (cs.ET); Machine Learning (cs.LG); Neural and Evolutionary Computing (cs.NE)
[2]  arXiv:1908.07960 [pdf]
Title: Toward a trait-based species pool hypothesis
Subjects: Populations and Evolution (q-bio.PE)
[3]  arXiv:1908.07957 [pdf, other]
Title: DISCo for the CIA: Deep learning, Instance Segmentation, and Correlations for Calcium Imaging Analysis
Subjects: Neurons and Cognition (q-bio.NC); Machine Learning (cs.LG); Image and Video Processing (eess.IV)
[4]  arXiv:1908.07935 [pdf, other]
Title: An Experimental Protocol to Derive and Validate a Quantum Model of Decision-Making
Subjects: Neurons and Cognition (q-bio.NC); Quantum Physics (quant-ph)
[5]  arXiv:1908.07884 [pdf, other]
Title: Evolution of specialization in dynamic fluids
Comments: 20 pages, 5 figures
Subjects: Populations and Evolution (q-bio.PE); Biological Physics (physics.bio-ph)
[6]  arXiv:1908.07837 [pdf]
Title: Mathematical analysis of a two-strain disease model with amplification
Comments: 22 pages, 11 figures
Subjects: Populations and Evolution (q-bio.PE)
[7]  arXiv:1908.07662 [pdf, other]
Title: Assessment of protein assembly prediction in CASP13
Subjects: Biomolecules (q-bio.BM)
[8]  arXiv:1908.07631 [pdf, other]
Title: Mapping the bacterial ways of life
Comments: 4 figures, 7 supplementary tables
Subjects: Populations and Evolution (q-bio.PE)
[9]  arXiv:1908.07611 [pdf]
Title: A physiological model of the inflammatory-thermal-pain-cardiovascular interactions during a pathogen challenge
Subjects: Tissues and Organs (q-bio.TO); Quantitative Methods (q-bio.QM)
[10]  arXiv:1908.07570 [pdf, other]
Title: How kinesin waits for ATP affects the nucleotide and load dependence of the stepping kinetics
Subjects: Subcellular Processes (q-bio.SC); Soft Condensed Matter (cond-mat.soft); Biological Physics (physics.bio-ph)
[11]  arXiv:1908.07520 [pdf]
Title: Transcriptomic Causal Networks identified patterns of differential gene regulation in human brain from Schizophrenia cases versus controls
Subjects: Genomics (q-bio.GN)
[12]  arXiv:1908.08010 (cross-list from cs.NE) [pdf, other]
Title: Improving the Results of De novo Peptide Identification via Tandem Mass Spectrometry Using a Genetic Programming-based Scoring Function for Re-ranking Peptide-Spectrum Matches
Comments: 13 pages, conference paper, containing 2 figures
Subjects: Neural and Evolutionary Computing (cs.NE); Quantitative Methods (q-bio.QM)
[13]  arXiv:1908.07974 (cross-list from math.DS) [pdf, other]
Title: Deterministic epidemic models for ebola infection with time-dependent controls
Subjects: Dynamical Systems (math.DS); Optimization and Control (math.OC); Populations and Evolution (q-bio.PE)
[14]  arXiv:1908.07847 (cross-list from cs.LG) [pdf]
Title: CUDA optimized Neural Network predicts blood glucose control from quantified joint mobility and anthropometrics
Comments: 5 pages, 6 figures, conference paper: International Conference on Information System and Data Mining, published at this https URL
Subjects: Machine Learning (cs.LG); Quantitative Methods (q-bio.QM); Machine Learning (stat.ML)

Wed, 21 Aug 2019

[15]  arXiv:1908.07446 [pdf]
Title: Playing magic tricks to deep neural networks untangles human deception
Subjects: Neurons and Cognition (q-bio.NC); Artificial Intelligence (cs.AI); Computer Vision and Pattern Recognition (cs.CV)
[16]  arXiv:1908.07428 [pdf, other]
Title: Data-Driven Predictive Modeling of Neuronal Dynamics using Long Short-Term Memory
Comments: 35 pages, 26 figures
Subjects: Neurons and Cognition (q-bio.NC); Machine Learning (cs.LG); Machine Learning (stat.ML)
[17]  arXiv:1908.07209 [pdf, other]
Title: DeepScaffold: a comprehensive tool for scaffold-based de novo drug discovery using deep learning
Comments: Updates to this version 1. It is found that the model architecture described in Section 2.3 corresponds to an older version of our model. Updates are therefore made to this section to reflect the latest model architecture. Figure 5 is also updated accordingly. 2. Section 2.5 is added to improve the clarity of the manuscript. 3. Other minor updates to language and formatting
Subjects: Quantitative Methods (q-bio.QM); Machine Learning (cs.LG)
[18]  arXiv:1908.07075 [pdf, other]
Title: Drift, stabilizing and destabilizing for a Keller-Siegel's system with the short-wavelength external signal
Subjects: Populations and Evolution (q-bio.PE); Pattern Formation and Solitons (nlin.PS)
[19]  arXiv:1908.07048 [pdf, other]
Title: Evolutionary dynamics of cancer: from epigenetic regulation to cell population dynamics -- mathematical model framework, applications, and open problems
Authors: Jinzhi Lei
Comments: 19 pages, 3 figures
Subjects: Cell Behavior (q-bio.CB)
[20]  arXiv:1908.07039 [pdf, other]
Title: Chimera States and Seizures in a Mouse Neuronal Model
Comments: 16 pages, 17 figures
Subjects: Neurons and Cognition (q-bio.NC); Pattern Formation and Solitons (nlin.PS)
[21]  arXiv:1908.07395 (cross-list from physics.bio-ph) [pdf]
Title: Sampling protein-ligand binding pathways to recover crystallographic binding poses using interactive molecular dynamics in virtual reality
Subjects: Biological Physics (physics.bio-ph); Computational Physics (physics.comp-ph); Biomolecules (q-bio.BM)
[22]  arXiv:1908.07092 (cross-list from cond-mat.stat-mech) [pdf, other]
Title: Spectral theory for the stability of dynamical systems on large oriented locally tree-like graphs
Comments: 24 pages, 4 figures
Subjects: Statistical Mechanics (cond-mat.stat-mech); Disordered Systems and Neural Networks (cond-mat.dis-nn); Social and Information Networks (cs.SI); Physics and Society (physics.soc-ph); Populations and Evolution (q-bio.PE)

Tue, 20 Aug 2019 (showing first 3 of 12 entries)

[23]  arXiv:1908.06872 [pdf, other]
Title: A Modified Ising Model of Barabási-Albert Network with Gene-type Spins
Comments: 30 pages, 8 figures, presented in poster form in SBHD'18, LA, USA; as a talk in SIAM CSE'19
Subjects: Quantitative Methods (q-bio.QM); Statistical Mechanics (cond-mat.stat-mech); Biological Physics (physics.bio-ph)
[24]  arXiv:1908.06746 [pdf]
Title: Maize Yield and Nitrate Loss Prediction with Machine Learning Algorithms
Subjects: Other Quantitative Biology (q-bio.OT); Machine Learning (cs.LG); Applications (stat.AP); Machine Learning (stat.ML)
[25]  arXiv:1908.06733 [pdf, other]
Title: Random-effects meta-analysis of phase I dose-finding studies using stochastic process priors
Comments: 23 pages, 6 figures, 7 tables
Subjects: Quantitative Methods (q-bio.QM); Methodology (stat.ME)
[ total of 52 entries: 1-25 | 26-50 | 51-52 ]
[ showing 25 entries per page: fewer | more | all ]

Disable MathJax (What is MathJax?)

Links to: arXiv, form interface, find, q-bio, new, 1908, contact, help  (Access key information)